Basic Information
Locus ID:
gene:TRIDC4AG067390
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 703824814 | 703825258 | + | gene:TRIDC4AG067390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 12,864.10 Da | 15.68 | 66.76 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 35 | 74 | 2.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 110 | 7.63E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 111 | 2.9E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 34 | 75 | 4.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 111 | 300.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 42 | 84 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 42 | 78 | 10.469233 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_040258843.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC109755634 [Aegilops tauschii subsp. strangulata] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | F2DI72 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG067390.