HalophFGD

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Basic Information
Locus ID: gene:TRIDC4AG067320
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: WD domain, G-beta repeat
Maps and Mapping Data
Chromosome Start End Strand ID
4A 703652741 703841760 + gene:TRIDC4AG067320
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.53 189,791.91 Da 32.63 90.17 -0.19
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 903 1167 8.23353E-42 -
Pfam PF00400 WD domain, G-beta repeat 589 627 0.0016 IPR001680
Pfam PF00400 WD domain, G-beta repeat 1538 1577 0.097 IPR001680
Pfam PF00400 WD domain, G-beta repeat 88 128 0.014 IPR001680
Pfam PF00400 WD domain, G-beta repeat 1582 1619 3.4E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 976 1013 1.0E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 1449 1486 1.3E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 1085 1125 2.5E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 1129 1167 8.0E-5 IPR001680
Pfam PF00635 MSP (Major sperm protein) domain 771 845 7.1E-7 IPR000535
Pfam PF00400 WD domain, G-beta repeat 635 671 1.2E-4 IPR001680
Pfam PF00635 MSP (Major sperm protein) domain 1251 1349 6.0E-6 IPR000535
Pfam PF00400 WD domain, G-beta repeat 677 714 3.1E-4 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 1374 1677 1.02E-43 IPR036322
SUPERFAMILY SSF49354 PapD-like 762 894 3.14E-10 IPR008962
SUPERFAMILY SSF50978 WD40 repeat-like 447 736 2.88E-47 IPR036322
SUPERFAMILY SSF49354 PapD-like 286 420 7.85E-8 IPR008962
SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like 912 1624 9.42E-60 IPR011047
SUPERFAMILY SSF50978 WD40 repeat-like 7 233 5.95E-22 IPR036322
SUPERFAMILY SSF49354 PapD-like 1247 1372 9.16E-11 IPR008962
Gene3D G3DSA:2.130.10.10 - 1 248 1.5E-36 IPR015943
Gene3D G3DSA:2.130.10.10 - 1372 1645 6.7E-66 IPR015943
Gene3D G3DSA:2.130.10.10 - 1043 1212 9.2E-44 IPR015943
Gene3D G3DSA:2.130.10.10 - 896 1042 1.9E-28 IPR015943
Gene3D G3DSA:2.60.40.10 Immunoglobulins 284 423 8.4E-13 IPR013783
Gene3D G3DSA:2.130.10.10 - 450 755 1.4E-70 IPR015943
Gene3D G3DSA:2.60.40.10 Immunoglobulins 1243 1368 1.8E-11 IPR013783
Gene3D G3DSA:2.60.40.10 Immunoglobulins 763 888 6.5E-11 IPR013783
SMART SM00320 WD40_4 930 966 77.0 IPR001680
SMART SM00320 WD40_4 442 481 17.0 IPR001680
SMART SM00320 WD40_4 497 535 0.62 IPR001680
SMART SM00320 WD40_4 1580 1619 3.0E-9 IPR001680
SMART SM00320 WD40_4 588 628 2.4E-7 IPR001680
SMART SM00320 WD40_4 539 584 200.0 IPR001680
SMART SM00320 WD40_4 1447 1486 1.1E-6 IPR001680
SMART SM00320 WD40_4 1042 1081 0.0097 IPR001680
SMART SM00320 WD40_4 1172 1210 110.0 IPR001680
SMART SM00320 WD40_4 131 171 45.0 IPR001680
SMART SM00320 WD40_4 631 672 9.2E-7 IPR001680
SMART SM00320 WD40_4 1084 1125 4.8E-6 IPR001680
SMART SM00320 WD40_4 974 1013 6.7E-8 IPR001680
SMART SM00320 WD40_4 675 714 1.6E-6 IPR001680
SMART SM00320 WD40_4 1537 1577 2.8E-5 IPR001680
SMART SM00320 WD40_4 4 39 49.0 IPR001680
SMART SM00320 WD40_4 1128 1167 2.5E-8 IPR001680
SMART SM00320 WD40_4 87 128 0.32 IPR001680
SMART SM00320 WD40_4 1490 1534 3.9 IPR001680
SMART SM00320 WD40_4 890 925 34.0 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1049 1086 9.651964 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 596 631 9.862871 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 638 675 9.151057 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 981 1022 12.881143 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1587 1619 12.580379 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1587 1619 10.469233 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1454 1486 10.258324 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 981 1016 10.390142 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 596 637 12.947979 IPR001680
ProSiteProfiles PS50202 Major sperm protein (MSP) domain profile. 1242 1368 11.543148 IPR000535
ProSiteProfiles PS50202 Major sperm protein (MSP) domain profile. 770 889 13.160536 IPR000535
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1135 1176 11.945434 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1454 1486 12.313033 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1091 1134 11.544415 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 682 714 9.03805 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1135 1167 9.757418 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1563 1586 8.67045 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1049 1090 11.878597 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 638 681 12.112524 IPR001680
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1068 1082 - IPR019775
PRINTS PR00320 G protein beta WD-40 repeat signature 1068 1082 9.1E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 1154 1168 9.1E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 1112 1126 9.1E-6 IPR020472
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G52360.3 - 0
RefSeq XP_037423710.1 uncharacterized protein LOC119288188 isoform X1 [Triticum dicoccoides] 0
Swiss-Prot Q9C827 Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 0
TrEMBL F2DI72 Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG067320.

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