Basic Information
Locus ID:
gene:TRIDC4AG062460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 676609549 | 676617495 | + | gene:TRIDC4AG062460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 40,020.76 Da | 43.40 | 77.72 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 358 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 150 | 360 | 1.2E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 283 | 370 | 4.3E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 282 | 6.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 320 | 359 | 4.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 71 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 57.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 327 | 360 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 327 | 360 | 9.256512 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 346 | 360 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29860.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | 0 |
| RefSeq | XP_037423473.1 | protein DECREASED SIZE EXCLUSION LIMIT 1-like [Triticum dicoccoides] | 0 |
| F1DLK1 | Protein DECREASED SIZE EXCLUSION LIMIT 1 OS=Nicotiana benthamiana OX=4100 GN=DSE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453QJE0 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG062460.