halophFGD

Basic Information

Locus ID: gene:TRIDC4AG058530

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4A	650957496	650966128	+	gene:TRIDC4AG058530

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.93	104,659.40 Da	33.05	86.86	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	38	318	5.50431E-70	-
Pfam	PF00400	WD domain, G-beta repeat	154	192	0.011	IPR001680
Pfam	PF04053	Coatomer WD associated region	340	784	1.3E-163	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	198	236	5.8E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	241	277	6.7E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	112	148	8.6E-6	IPR001680
SUPERFAMILY	SSF101898	NHL repeat	240	513	1.6E-19	-
SUPERFAMILY	SSF50978	WD40 repeat-like	23	318	1.15E-78	IPR036322
Gene3D	G3DSA:1.25.40.470	-	611	819	2.3E-83	-
Gene3D	G3DSA:2.130.10.10	-	31	321	6.5E-113	IPR015943
SMART	SM00320	WD40_4	25	64	0.44	IPR001680
SMART	SM00320	WD40_4	239	278	4.6E-12	IPR001680
SMART	SM00320	WD40_4	67	106	0.3	IPR001680
SMART	SM00320	WD40_4	152	192	2.0E-7	IPR001680
SMART	SM00320	WD40_4	195	236	7.5E-8	IPR001680
SMART	SM00320	WD40_4	109	148	9.7E-9	IPR001680
PIRSF	PIRSF005567	Beta'-COP	23	906	0.0	IPR016453
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	246	277	12.578312	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	202	239	9.915599	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	202	245	13.215325	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	32	73	8.703868	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	159	201	12.17936	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	116	148	12.74747	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	246	287	15.688272	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	116	148	10.601049	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	159	193	10.047417	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	265	279	5.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	135	149	5.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	223	237	5.2E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	873	892	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79990.1	structural molecules.
RefSeq	XP_037423318.1	coatomer subunit beta'-1-like isoform X2 [Triticum dicoccoides]
Swiss-Prot	Q5VQ78	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1
TrEMBL	A0A3B6I298	Coatomer subunit beta' OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG058530.