Basic Information
Locus ID:
gene:TRIDC4AG055630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 634844037 | 634845428 | + | gene:TRIDC4AG055630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 48,556.36 Da | 34.09 | 75.53 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 157 | 190 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 355 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 450 | 1.63E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 454 | 1.9E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 277 | 5.1E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 233 | 271 | 8.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 449 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 190 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 0.0069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 409 | 88.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 325 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 199 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 158 | 190 | 10.521959 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 42 | 68 | 11.553852 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 303 | 317 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 343 | 357 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 177 | 191 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 3.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037423137.1 | zinc finger CCCH domain-containing protein 48-like [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6I2Z3 | C3H1-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG055630.