Basic Information
Locus ID:
gene:TRIDC4AG055150
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 632608022 | 632609548 | + | gene:TRIDC4AG055150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 30,906.20 Da | 62.07 | 82.94 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 118 | 161 | 5.54498E-18 | - |
| Pfam | PF17123 | RING-like zinc finger | 118 | 147 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 167 | 1.57E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 167 | 2.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 160 | 2.4E-6 | IPR001841 |
| SMART | SM01047 | C1_4_2 | 118 | 162 | 0.0085 | IPR004595 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 161 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 237 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037423106.1 | RING-H2 finger protein ATL1-like [Triticum dicoccoides] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6I4J8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG055150.