Basic Information
Locus ID:
gene:TRIDC4AG055020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
WDR3
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 631876704 | 631882299 | - | gene:TRIDC4AG055020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 103,305.09 Da | 41.24 | 88.51 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 392 | 688 | 2.86598E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 651 | 688 | 5.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 180 | 1.5E-5 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 790 | 891 | 2.3E-18 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 61 | 96 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 221 | 5.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 610 | 646 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 138 | 4.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 421 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 603 | 1.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 240 | 510 | 2.01E-23 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 39 | 668 | 2.43E-65 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 145 | 1.1E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 698 | 8.2E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 432 | 640 | 2.2E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 431 | 1.3E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 332 | 376 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 607 | 646 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 649 | 688 | 3.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 461 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 8.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 180 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 96 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 509 | 0.0086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 562 | 0.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 509 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 656 | 688 | 11.444681 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 614 | 646 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 656 | 688 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 613 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 614 | 655 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 603 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 189 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 430 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 83 | 105 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 139 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 139 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 148 | 183 | 12.024679 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 167 | 181 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 83 | 97 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 125 | 139 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 591 | 605 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 775 | - | - |
| Coils | Coil | Coil | 746 | 776 | - | - |
| Coils | Coil | Coil | 290 | 310 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21540.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037423097.1 | WD repeat-containing protein 3-like [Triticum dicoccoides] | 0 |
| Q8BHB4 | WD repeat-containing protein 3 OS=Mus musculus OX=10090 GN=Wdr3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HZM2 | Utp12 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG055020.