Basic Information
Locus ID:
gene:TRIDC4AG044470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 586098799 | 586103096 | - | gene:TRIDC4AG044470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 35,271.30 Da | 33.79 | 78.39 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 7 | 284 | 5.00237E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 284 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 243 | 2.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 106 | 1.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 147 | 0.0063 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 7 | 304 | 1.06E-67 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 310 | 2.1E-103 | IPR015943 |
| SMART | SM00320 | WD40_4 | 67 | 106 | 3.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 24 | 62 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 243 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 190 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 147 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 285 | 1.4E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 294 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 115 | 148 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 245 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 30 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 115 | 148 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 74 | 109 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 74 | 115 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 252 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 253 | 290 | 10.100143 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 8 | 22 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 230 | 244 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 134 | 148 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 93 | 107 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 1.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 93 | 107 | 1.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 230 | 244 | 1.6E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18140.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037422463.1 | target of rapamycin complex subunit LST8 [Triticum dicoccoides] | 0 |
| Q9AYE4 | Target of rapamycin complex subunit LST8 OS=Oryza sativa subsp. japonica OX=39947 GN=LST8 PE=1 SV=1 | 0 | |
| TrEMBL | W5DRS9 | Target of rapamycin complex subunit LST8 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG044470.