Basic Information
Locus ID:
gene:TRIDC4AG042900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 578076155 | 578079741 | + | gene:TRIDC4AG042900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 55,739.79 Da | 51.55 | 72.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 189 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 398 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 353 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 146 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 409 | 1.51E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 50 | 196 | 2.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 202 | 457 | 1.9E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 189 | 5.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 91 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 354 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 260 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 398 | 3.9E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 155 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 191 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 407 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 191 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 149 | 10.205597 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 365 | 398 | 10.07378 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 247 | 261 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 133 | 147 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 176 | 190 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 385 | 399 | 4.2E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 454 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27640.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037422341.1 | denticleless protein homolog isoform X1 [Triticum dicoccoides] | 0 |
| Q5ZJW8 | Denticleless protein homolog OS=Gallus gallus OX=9031 GN=DTL PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HWY8 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG042900.