Basic Information
Locus ID:
gene:TRIDC4AG042790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 577860508 | 577864575 | + | gene:TRIDC4AG042790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 27,284.65 Da | 60.50 | 77.31 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 106 | 149 | 3.59008E-8 | IPR018392 |
| Pfam | PF00646 | F-box domain | 35 | 67 | 8.4E-7 | IPR001810 |
| Pfam | PF01476 | LysM domain | 107 | 150 | 5.1E-7 | IPR018392 |
| SUPERFAMILY | SSF81383 | F-box domain | 30 | 100 | 3.92E-14 | IPR036047 |
| SUPERFAMILY | SSF54106 | LysM domain | 106 | 150 | 6.67E-8 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 100 | 155 | 1.7E-14 | IPR036779 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 71 | 3.5E-9 | - |
| SMART | SM00257 | LysM_2 | 106 | 150 | 4.4E-4 | IPR018392 |
| SMART | SM00256 | fbox_2 | 35 | 75 | 0.0012 | IPR001810 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 105 | 149 | 11.900306 | IPR018392 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 79 | 9.629941 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55000.1 | peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_037422335.1 | F-box protein At1g55000-like [Triticum dicoccoides] | 0 |
| Q9FZ32 | F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HWG5 | LysM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG042790.