Basic Information
Locus ID:
gene:TRIDC4AG042240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger C3HC4 type domain containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 575780069 | 575794842 | + | gene:TRIDC4AG042240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 53,551.12 Da | 46.04 | 98.56 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10269 | Transmembrane Fragile-X-F protein | 34 | 298 | 2.1E-93 | IPR019396 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 423 | 466 | 4.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 417 | 468 | 9.64E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 401 | 472 | 3.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 426 | 460 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 426 | 461 | 10.954966 | IPR001841 |
| Coils | Coil | Coil | 402 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18470.1 | Transmembrane Fragile-X-F-associated protein. | 0 |
| RefSeq | XP_037422292.1 | uncharacterized protein LOC119286925 [Triticum dicoccoides] | 0 |
| Q7M3S9 | RING finger protein B OS=Dictyostelium discoideum OX=44689 GN=rngB PE=2 SV=2 | 0 | |
| TrEMBL | M1FYS2 | Zinc finger C3HC4 type domain containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG042240.