halophFGD

Basic Information

Locus ID: gene:TRIDC4AG041810

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4A	573833528	573838668	+	gene:TRIDC4AG041810

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.49	137,428.98 Da	33.82	88.44	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	19	327	9.8794E-79	-
Pfam	PF00400	WD domain, G-beta repeat	136	173	1.8E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	54	89	1.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	208	241	8.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	251	286	1.9E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	94	131	4.8E-9	IPR001680
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	825	1227	8.0E-169	IPR010714
Pfam	PF04053	Coatomer WD associated region	358	778	1.2E-129	IPR006692
SUPERFAMILY	SSF50978	WD40 repeat-like	10	325	1.1E-76	IPR036322
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	246	517	6.8E-10	IPR011048
Gene3D	G3DSA:2.130.10.10	-	9	329	3.1E-128	IPR015943
Gene3D	G3DSA:1.25.40.470	-	650	822	7.1E-60	-
SMART	SM00320	WD40_4	247	286	1.6E-6	IPR001680
SMART	SM00320	WD40_4	50	89	5.2E-7	IPR001680
SMART	SM00320	WD40_4	92	131	5.5E-10	IPR001680
SMART	SM00320	WD40_4	8	47	0.67	IPR001680
SMART	SM00320	WD40_4	203	242	5.5E-6	IPR001680
SMART	SM00320	WD40_4	134	173	9.0E-12	IPR001680
SMART	SM00320	WD40_4	289	327	150.0	IPR001680
PIRSF	PIRSF003354	Alpha-COP	9	1223	0.0	IPR016391
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	99	131	11.128319	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	210	251	12.981398	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	210	244	10.574686	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	15	56	9.03805	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	57	98	13.382416	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	57	92	10.416506	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	141	174	13.2374	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	99	140	14.017362	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	254	286	11.971952	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	254	295	15.120162	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	141	174	16.089291	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	160	174	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	118	132	3.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	160	174	3.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	273	287	3.3E-7	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_037422263.1	coatomer subunit alpha-3 [Triticum dicoccoides]
Swiss-Prot	Q0J3D9	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1
TrEMBL	A0A3B6IMT6	Coatomer subunit alpha OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG041810.