Basic Information
Locus ID:
gene:TRIDC4AG040350
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 564157898 | 564163897 | - | gene:TRIDC4AG040350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 37,382.62 Da | 31.43 | 77.57 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 40 | 336 | 1.68652E-99 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 248 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 82 | 118 | 6.1E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 336 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 42 | 76 | 7.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 127 | 162 | 2.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 168 | 205 | 2.5E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 293 | 2.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 336 | 1.05E-96 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 23 | 340 | 1.7E-131 | IPR015943 |
| SMART | SM00320 | WD40_4 | 208 | 248 | 6.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 205 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 118 | 4.2E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 293 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 76 | 3.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 337 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 5.7E-11 | IPR001680 |
| PIRSF | PIRSF002394 | GNBP_B | 18 | 339 | 5.3E-83 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 44 | 76 | 13.052855 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 86 | 119 | 18.562237 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 172 | 17.693363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 44 | 76 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 214 | 15.955617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 86 | 119 | 15.188299 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 302 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 209 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 257 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 168 | 13.448307 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 216 | 253 | 8.887423 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 192 | 206 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 280 | 294 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 105 | 119 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 235 | 249 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 3.3E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 192 | 206 | 3.3E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 105 | 119 | 3.3E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49660.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037422182.1 | COMPASS-like H3K4 histone methylase component WDR5A [Triticum dicoccoides] | 0 |
| Q9M2Z2 | COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A453H9J6 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG040350.