Basic Information
Locus ID:
gene:TRIDC4AG039140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 553537459 | 553542462 | - | gene:TRIDC4AG039140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 84,582.92 Da | 40.53 | 78.98 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 172 | 197 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 138 | 626 | 6.59E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 197 | 3.3E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 130 | 213 | 6.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 416 | 6.8E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 421 | 674 | 3.5E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 129 | 1.6E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 249 | 288 | 0.0047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 197 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 55 | 0.034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 246 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 625 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 21 | 56 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 165 | 197 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 197 | 10.70896 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 130 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G07410.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037422093.1 | WD repeat-containing protein PCN-like [Triticum dicoccoides] | 0 |
| Q8RXU6 | WD repeat-containing protein PCN OS=Arabidopsis thaliana OX=3702 GN=PCN PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HZ44 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG039140.