Basic Information
Locus ID:
gene:TRIDC4AG039130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 553399794 | 553402855 | - | gene:TRIDC4AG039130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 30,072.53 Da | 48.58 | 55.25 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 148 | 192 | 1.7E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 21 | 95 | 3.7E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 197 | 252 | 1.6E-9 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 86 | 143 | 1.31E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 18 | 85 | 2.75E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 199 | 1.38E-11 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 258 | 1.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 213 | 3.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 192 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 85 | 149 | 32.98003 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 193 | 11.692616 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 14 | 83 | 25.866381 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_037422091.1 | E3 ubiquitin-protein ligase SRFP1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HXP3 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG039130.