Basic Information
Locus ID:
gene:TRIDC4AG038710-72141
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
SMG1
Description:
Belongs to the PI3 PI4-kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 549790974 | 549854167 | - | gene:TRIDC4AG038710-72141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 398,440.34 Da | 44.36 | 93.20 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05170 | PIKKc_SMG1 | 2271 | 2580 | 1.2737E-177 | IPR039414 |
| Pfam | PF15785 | Serine/threonine-protein kinase smg-1 | 955 | 1447 | 2.3E-42 | IPR031559 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 298 | 0.0017 | IPR001680 |
| Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2302 | 2579 | 1.0E-48 | IPR000403 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 378 | 1.07E-43 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 407 | 1025 | 2.13E-6 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2227 | 2582 | 2.96E-74 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 561 | 2084 | 2.88E-5 | IPR016024 |
| Gene3D | G3DSA:3.30.1010.10 | - | 2230 | 2358 | 3.9E-22 | - |
| Gene3D | G3DSA:1.10.1070.11 | - | 2438 | 2621 | 6.9E-42 | IPR036940 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 381 | 3.2E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 163 | 206 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 1.8 | IPR001680 |
| SMART | SM00146 | pi3k_hr1_6 | 2301 | 2645 | 1.1E-45 | IPR000403 |
| SMART | SM00320 | WD40_4 | 113 | 160 | 8.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 255 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 298 | 6.4E-4 | IPR001680 |
| SMART | SM01345 | Rapamycin_bind_3 | 2094 | 2218 | 0.0033 | - |
| SMART | SM00320 | WD40_4 | 306 | 344 | 2.7 | IPR001680 |
| ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2300 | 2573 | 38.7533 | IPR000403 |
| ProSiteProfiles | PS51189 | FAT domain profile. | 1450 | 2061 | 10.024086 | IPR014009 |
| ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2473 | 2493 | - | IPR018936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2910 | 2934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| Coils | Coil | Coil | 3138 | 3158 | - | - |
| Coils | Coil | Coil | 3084 | 3104 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21520.2 | - | 0 |
| RefSeq | XP_037419005.1 | serine/threonine-protein kinase SMG1-like [Triticum dicoccoides] | 0 |
| C5J7W8 | Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453HCL4 | non-specific serine/threonine protein kinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038710-72141.