Basic Information
Locus ID:
gene:TRIDC4AG038560
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 548523236 | 548528993 | + | gene:TRIDC4AG038560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 61,391.10 Da | 52.63 | 76.85 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 160 | 212 | 1.09624E-24 | - |
| Pfam | PF00412 | LIM domain | 160 | 215 | 2.6E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 309 | 540 | 6.1E-94 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 186 | 241 | 1.32E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 154 | 185 | 7.54E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 151 | 218 | 2.5E-15 | - |
| SMART | SM00726 | uim | 78 | 97 | 0.034 | IPR003903 |
| SMART | SM00132 | lim_4 | 159 | 211 | 4.7E-10 | IPR001781 |
| SMART | SM00726 | uim | 109 | 128 | 0.63 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 158 | 218 | 12.1771 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 78 | 97 | 9.921792 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 109 | 124 | 9.769357 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 160 | 194 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_037422049.1 | protein DA1-related 1-like [Triticum dicoccoides] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6HVC8 | LIM zinc-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038560.