Basic Information
Locus ID:
gene:TRIDC4AG038460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 547833804 | 547839204 | + | gene:TRIDC4AG038460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 20,666.34 Da | 58.05 | 67.60 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 94 | 144 | 7.5E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 173 | 3.97E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 175 | 9.3E-16 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 90 | 179 | 15.577372 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 144 | 9.877997 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037422040.1 | probable E3 ubiquitin-protein ligase ARI1 isoform X1 [Triticum dicoccoides] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HZW2 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038460.