Basic Information
Locus ID:
gene:TRIDC4AG038440
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
BING4CT (NUC141) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 547616878 | 547622821 | - | gene:TRIDC4AG038440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 63,544.40 Da | 38.26 | 75.23 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 338 | 3.6E-5 | IPR001680 |
| Pfam | PF08149 | BING4CT (NUC141) domain | 385 | 463 | 5.9E-31 | IPR012952 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 408 | 1.98E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 418 | 1.1E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 214 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 375 | 180.0 | IPR001680 |
| SMART | SM01033 | BING4CT_2 | 384 | 464 | 1.2E-45 | IPR012952 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 340 | 10.759232 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 474 | 501 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048569562.1 | probable U3 small nucleolar RNA-associated protein 7 isoform X2 [Triticum urartu] | 0 |
| Q9P4X3 | Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8R7Q2L5 | BING4CT domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038440.