Basic Information
Locus ID:
gene:TRIDC4AG038370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 546395765 | 546399370 | + | gene:TRIDC4AG038370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 67,582.89 Da | 50.11 | 67.68 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 256 | 319 | 8.1E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 337 | 377 | 2.0E-5 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 333 | 397 | 2.78E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 326 | 3.43E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 268 | 5.05E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 268 | 4.4E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 315 | 566 | 1.0E-54 | - |
| SMART | SM00647 | ibrneu5 | 328 | 392 | 0.75 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 256 | 319 | 1.4E-16 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 229 | 9.00757 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 181 | 396 | 39.216217 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 34 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037422031.1 | probable E3 ubiquitin-protein ligase ARI3 [Triticum dicoccoides] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7U4X1 | RBR-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038370.