Basic Information
Locus ID:
gene:TRIDC4AG038300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 545909174 | 545910642 | - | gene:TRIDC4AG038300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 51,629.06 Da | 36.03 | 74.36 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 100 | 429 | 9.90786E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 282 | 6.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 428 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 374 | 0.045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 92 | 434 | 5.77E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 296 | 479 | 1.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 197 | 295 | 1.6E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 83 | 180 | 9.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 127 | 165 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 375 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 126 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 241 | 0.0051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 333 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 429 | 3.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 250 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 282 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 301 | 332 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 374 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 282 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 438 | 8.770704 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 416 | 430 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048573243.1 | protein JINGUBANG-like [Triticum urartu] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7U528 | WD_REPEATS_REGION domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038300.