Basic Information
Locus ID:
gene:TRIDC4AG038280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 545873056 | 545874486 | + | gene:TRIDC4AG038280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 49,383.64 Da | 32.05 | 75.36 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 97 | 425 | 3.49724E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 279 | 6.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 237 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 380 | 424 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 371 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 161 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 91 | 430 | 1.1E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 191 | 293 | 9.9E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 179 | 5.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 294 | 465 | 2.8E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 377 | 425 | 5.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 330 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 162 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 86 | 123 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 372 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 1.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 279 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 371 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 243 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 329 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 279 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 247 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 384 | 434 | 9.104886 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 412 | 426 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 1.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037422029.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HV97 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG038280.