Basic Information
Locus ID:
gene:TRIDC4AG035530
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 522723825 | 522730829 | - | gene:TRIDC4AG035530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 51,831.86 Da | 55.24 | 72.62 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17979 | Cysteine rich domain with multizinc binding regions | 262 | 423 | 6.5E-45 | IPR040909 |
| Pfam | PF13639 | Ring finger domain | 138 | 188 | 7.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 194 | 9.72E-15 | - |
| Gene3D | G3DSA:3.30.40.140 | - | 229 | 319 | 2.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 228 | 3.8E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 187 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 188 | 12.149959 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47570.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037421814.1 | E3 ubiquitin-protein ligase CHFR-like [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6HV71 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG035530.