Basic Information
Locus ID:
gene:TRIDC4AG029960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 461244779 | 461249155 | - | gene:TRIDC4AG029960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 52,804.46 Da | 40.78 | 74.48 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 305 | 4.4E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 51 | 117 | 9.9E-10 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 396 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 165 | 457 | 3.66E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 470 | 9.5E-103 | IPR015943 |
| SMART | SM00320 | WD40_4 | 309 | 349 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 259 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 305 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 195 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 396 | 3.8E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 308 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 363 | 398 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 314 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 405 | 12.112524 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19540.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037421465.1 | glutamate-rich WD repeat-containing protein 1-like [Triticum dicoccoides] | 0 |
| Q9ZUN8 | Protein HEAT STRESS TOLERANT DWD 1 OS=Arabidopsis thaliana OX=3702 GN=HTD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HU10 | CAF1C_H4-bd domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG029960.