Basic Information
Locus ID:
gene:TRIDC4AG029500
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 456818794 | 456820239 | + | gene:TRIDC4AG029500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 17,249.22 Da | 53.70 | 73.79 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 11 | 53 | 1.27699E-17 | - |
| Pfam | PF13639 | Ring finger domain | 10 | 53 | 1.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 59 | 1.5E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | 3.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 11 | 52 | 7.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 11 | 53 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 151 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037421430.1 | E3 ubiquitin-protein ligase EL5-like [Triticum dicoccoides] | 0 |
| Q9LM69 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HTW5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG029500.