Basic Information
Locus ID:
gene:TRIDC4AG026550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
TRIP-1
Description:
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 398545063 | 398549635 | + | gene:TRIDC4AG026550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 42,487.63 Da | 46.87 | 76.13 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 63 | 370 | 1.4147E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 93 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 275 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 230 | 0.061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 370 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 136 | 5.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 370 | 1.92E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 382 | 2.3E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 54 | 94 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 230 | 8.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 275 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 318 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 372 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 93 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 239 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 141 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 370 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 278 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 198 | 235 | 9.704691 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 340 | 370 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 145 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 123 | 137 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 217 | 231 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 2.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 217 | 231 | 2.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 2.4E-7 | IPR020472 |
| Hamap | MF_03008 | Eukaryotic translation initiation factor 3 subunit I [EIF3I]. | 57 | 382 | 74.121292 | IPR027525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46290.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037421224.1 | eukaryotic translation initiation factor 3 subunit I-like [Triticum dicoccoides] | 0 |
| Q38884 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2 | 0 | |
| TrEMBL | L7P617 | Eukaryotic translation initiation factor 3 subunit I OS=Triticum aestivum OX=4565 GN=eIF3i PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG026550.