Basic Information
Locus ID:
gene:TRIDC4AG026360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 391958406 | 391961007 | - | gene:TRIDC4AG026360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 33,593.50 Da | 35.94 | 87.33 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 13 | 320 | 1.51538E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 272 | 2.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 320 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 133 | 0.012 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 155 | 207 | 4.1E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 319 | 5.68E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 322 | 5.9E-84 | IPR015943 |
| SMART | SM00320 | WD40_4 | 233 | 272 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 187 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 230 | 6.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 133 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 90 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 47 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 320 | 5.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 240 | 274 | 13.342854 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 187 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 282 | 322 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 281 | 17.392599 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 187 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 58 | 99 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 282 | 322 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 239 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 259 | 273 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 34 | 48 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 259 | 273 | 3.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29830.1 | Transducin/WD40 repeat-like superfamily protein. The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin. | 0 |
| RefSeq | XP_037421215.1 | WD repeat-containing protein VIP3-like [Triticum dicoccoides] | 0 |
| Q9SZQ5 | WD repeat-containing protein VIP3 OS=Arabidopsis thaliana OX=3702 GN=VIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HSH9 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG026360.