Basic Information
Locus ID:
gene:TRIDC4AG025240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 358495386 | 358547549 | - | gene:TRIDC4AG025240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 131,360.91 Da | 42.45 | 78.57 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 60 | 183 | 1.33102E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 201 | 529 | 2.15549E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 890 | 1099 | 2.5E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 203 | 524 | 2.2E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 628 | 880 | 3.8E-75 | IPR024729 |
| Pfam | PF00917 | MATH domain | 66 | 183 | 1.2E-19 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 198 | 554 | 1.55E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 56 | 190 | 8.5E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 688 | 805 | 1.7E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 806 | 903 | 6.5E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 199 | 5.9E-51 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 200 | 528 | 2.7E-89 | - |
| SMART | SM00061 | math_3 | 60 | 164 | 3.7E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 203 | 527 | 40.246323 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 183 | 38.059464 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 204 | 219 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 443 | 460 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 58 | - | - |
| Coils | Coil | Coil | 543 | 563 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037421153.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7U888 | ubiquitinyl hydrolase 1 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG025240.