Basic Information
Locus ID:
gene:TRIDC4AG024660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
ATP-dependent protease La (LON) substrate-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 344341492 | 344378048 | + | gene:TRIDC4AG024660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 54,522.88 Da | 51.19 | 86.95 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02190 | ATP-dependent protease La (LON) substrate-binding domain | 277 | 469 | 7.6E-15 | IPR003111 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 192 | 230 | 2.7E-11 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 39 | 168 | 1.27E-13 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 188 | 255 | 1.7E-18 | - |
| SUPERFAMILY | SSF88697 | PUA domain-like | 277 | 468 | 1.91E-30 | IPR015947 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 33 | 180 | 2.6E-13 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 274 | 2.2E-23 | IPR013083 |
| Gene3D | G3DSA:2.30.130.40 | - | 275 | 374 | 3.6E-20 | - |
| Gene3D | G3DSA:1.20.58.1480 | - | 404 | 470 | 1.2E-7 | - |
| SMART | SM00464 | lon_5 | 276 | 470 | 4.3E-7 | IPR003111 |
| SMART | SM00184 | ring_2 | 193 | 230 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS51787 | Lon N-terminal domain profile. | 274 | 470 | 14.694305 | IPR003111 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 231 | 13.049892 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 208 | 217 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18660.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037421124.1 | LON peptidase N-terminal domain and RING finger protein 1-like [Triticum dicoccoides] | 0 |
| D3YY23 | LON peptidase N-terminal domain and RING finger protein 1 OS=Mus musculus OX=10090 GN=Lonrf1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6HUK5 | LON peptidase N-terminal domain and RING finger protein 1-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG024660.