Basic Information
Locus ID:
gene:TRIDC4AG023340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 299039665 | 299044617 | - | gene:TRIDC4AG023340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 56,212.65 Da | 42.28 | 79.31 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 493 | 8.80232E-88 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 366 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 493 | 1.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 408 | 4.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 324 | 2.0E-4 | IPR001680 |
| Pfam | PF08799 | pre-mRNA processing factor 4 (PRP4) like | 83 | 111 | 1.2E-12 | IPR014906 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 241 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 283 | 5.3E-5 | IPR001680 |
| SUPERFAMILY | SSF158230 | PRP4-like | 62 | 115 | 3.66E-15 | IPR036285 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 205 | 492 | 4.97E-87 | IPR036322 |
| Gene3D | G3DSA:4.10.280.110 | - | 52 | 133 | 7.7E-15 | IPR036285 |
| Gene3D | G3DSA:2.130.10.10 | - | 376 | 503 | 1.8E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 192 | 375 | 9.9E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 1.3E-10 | IPR001680 |
| SMART | SM00500 | pr04_2 | 78 | 127 | 4.6E-16 | IPR014906 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 5.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 451 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 324 | 6.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 241 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 408 | 4.5E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 283 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 292 | 328 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 461 | 493 | 11.866497 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 376 | 411 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 493 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 250 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 283 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 460 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 334 | 371 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 292 | 333 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 376 | 417 | 16.390055 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 375 | 14.953072 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 395 | 409 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 353 | 367 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 311 | 325 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 311 | 325 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 48 | 68 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41500.1 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | 0 |
| RefSeq | XP_037421029.1 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Triticum dicoccoides] | 0 |
| O22212 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HWG3 | SFM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG023340.