Basic Information
Locus ID:
gene:TRIDC4AG020800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 228077520 | 228092820 | - | gene:TRIDC4AG020800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 70,087.93 Da | 45.03 | 108.76 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 38 | 71 | 5.4E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 518 | 540 | 0.12 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 208 | 229 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 492 | 515 | 0.62 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 380 | 631 | 2.56E-41 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 168 | 404 | 8.63E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 38 | 71 | 1.57E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 164 | 220 | 1.3E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 35 | 76 | 6.6E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 408 | 644 | 2.4E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 221 | 407 | 2.7E-39 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 286 | 310 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 208 | 232 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 388 | 413 | 62.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 207 | 0.0048 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 517 | 7.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 362 | 387 | 4.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 336 | 361 | 0.072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 311 | 335 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 260 | 285 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 233 | 258 | 20.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 595 | 620 | 7.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 414 | 439 | 0.21 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 466 | 491 | 0.74 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 440 | 465 | 4.5E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 569 | 594 | 9.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 518 | 542 | 0.0023 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_048570329.1 | F-box/LRR-repeat protein 4 isoform X1 [Triticum urartu] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7Q4W2 | F-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG020800.