halophFGD

Basic Information

Locus ID: gene:TRIDC4AG020270

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Belongs to the TUB family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4A	216346135	216350314	+	gene:TRIDC4AG020270

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.63	30,309.40 Da	53.96	79.13	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	52	100	2.1E-6	IPR001810
Pfam	PF01167	Tub family	116	273	6.7E-54	IPR000007
SUPERFAMILY	SSF81383	F-box domain	44	94	6.02E-6	IPR036047
SUPERFAMILY	SSF54518	Tubby C-terminal domain-like	102	274	1.44E-45	IPR025659
Gene3D	G3DSA:3.20.90.10	Tubby Protein; Chain A	113	276	1.4E-43	IPR025659
Gene3D	G3DSA:1.20.1280.50	-	46	99	5.9E-6	-
PRINTS	PR01573	Tubby superfamily signature	168	184	4.7E-30	IPR000007
PRINTS	PR01573	Tubby superfamily signature	184	208	4.7E-30	IPR000007
PRINTS	PR01573	Tubby superfamily signature	233	260	4.7E-30	IPR000007

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G47900.3	tubby like protein 3. Member of TLP family
RefSeq	XP_044363516.1	tubby-like F-box protein 6 [Triticum aestivum]
Swiss-Prot	Q10LG8	Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1
TrEMBL	A0A3B6HW35	Tubby-like F-box protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG020270.