Basic Information
Locus ID:
gene:TRIDC4AG019950
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 211664689 | 211677245 | + | gene:TRIDC4AG019950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 103,400.64 Da | 51.82 | 83.61 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 733 | 887 | 3.57527E-61 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 318 | 886 | 4.5E-87 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 492 | 632 | 6.3E-8 | IPR029346 |
| Pfam | PF06337 | DUSP domain | 35 | 138 | 1.9E-21 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 14 | 138 | 4.58E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 316 | 889 | 4.71E-110 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 3 | 150 | 2.5E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 625 | 895 | 5.1E-59 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 307 | 544 | 1.2E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 237 | 4.6E-12 | - |
| SMART | SM00695 | dusp | 31 | 140 | 6.5E-26 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 137 | 19.061588 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 318 | 889 | 58.099461 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 831 | 848 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 319 | 334 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_037420895.1 | ubiquitin carboxyl-terminal hydrolase 5-like [Triticum dicoccoides] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6HRJ2 | Ubiquitin carboxyl-terminal hydrolase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG019950.