Basic Information
Locus ID:
gene:TRIDC4AG017220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Bromodomain and WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 158935065 | 158951642 | + | gene:TRIDC4AG017220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 160,554.84 Da | 44.79 | 67.27 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 172 | 536 | 2.78316E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 279 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 233 | 4.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 168 | 191 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 344 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 166 | 577 | 1.95E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 378 | 1.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 381 | 594 | 5.1E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 136 | 309 | 1.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 234 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 344 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 578 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 536 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 279 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 422 | 0.63 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 192 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 243 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 201 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 288 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 344 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 279 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 235 | 9.783781 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 820 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 892 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49430.1 | WD40/YVTN repeat-like-containing domain;Bromodomain. | 0 |
| RefSeq | XP_048571268.1 | PH-interacting protein-like isoform X2 [Triticum urartu] | 0 |
| Q8VDD9 | PH-interacting protein OS=Mus musculus OX=10090 GN=Phip PE=1 SV=2 | 0 | |
| TrEMBL | M7ZQ19 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Triticum urartu OX=4572 GN=TRIUR3_33943 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG017220.