Basic Information
Locus ID:
gene:TRIDC4AG016310
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 143586167 | 143590654 | + | gene:TRIDC4AG016310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 94,231.38 Da | 70.86 | 56.53 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16574 | RING-HC_Topors | 483 | 525 | 9.4632E-18 | - |
| Pfam | PF13639 | Ring finger domain | 483 | 525 | 4.9E-7 | IPR001841 |
| Pfam | PF00628 | PHD-finger | 576 | 620 | 3.9E-8 | IPR019787 |
| SUPERFAMILY | SSF57850 | RING/U-box | 482 | 532 | 2.91E-14 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 547 | 620 | 1.06E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 480 | 542 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 543 | 623 | 2.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 483 | 524 | 1.5E-5 | IPR001841 |
| SMART | SM00249 | PHD_3 | 575 | 620 | 4.5E-8 | IPR001965 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 483 | 525 | 12.25323 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 573 | 622 | 9.6057 | IPR019787 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 502 | 511 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_048571289.1 | ABC transporter F family member 4-like [Triticum urartu] | 0 |
| TrEMBL | A0A8R7U6Z4 | PHD and RING finger domain-containing protein 1 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG016310.