Basic Information
Locus ID:
gene:TRIDC4AG015380
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 135842562 | 135846207 | + | gene:TRIDC4AG015380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 108,150.80 Da | 53.89 | 83.49 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 787 | 815 | 0.18 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 459 | 815 | 1.71E-15 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 252 | 353 | 3.69E-8 | IPR011333 |
| SUPERFAMILY | SSF48452 | TPR-like | 784 | 916 | 1.64E-14 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 251 | 394 | 3.0E-12 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 662 | 850 | 5.6E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 862 | 968 | 7.9E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 410 | 626 | 1.6E-12 | IPR011990 |
| SMART | SM00225 | BTB_4 | 256 | 356 | 0.0059 | IPR000210 |
| SMART | SM00028 | tpr_5 | 882 | 915 | 38.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 712 | 745 | 45.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 786 | 819 | 0.19 | IPR019734 |
| SMART | SM00028 | tpr_5 | 586 | 619 | 3.3 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 786 | 819 | 8.1129 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51770.2 | tetratricopeptide repeat (TPR)-containing protein. Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS | 0 |
| RefSeq | XP_037420579.1 | ethylene-overproduction protein 1-like [Triticum dicoccoides] | 0 |
| O65020 | Ethylene-overproduction protein 1 OS=Arabidopsis thaliana OX=3702 GN=ETO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6HQZ0 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG015380.