Basic Information
Locus ID:
gene:TRIDC4AG014620
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 122033816 | 122039670 | + | gene:TRIDC4AG014620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 59,574.65 Da | 48.24 | 76.40 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 142 | 4.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 398 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 440 | 3.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 103 | 440 | 4.33E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 79 | 256 | 1.2E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 528 | 8.5E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 103 | 142 | 8.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 232 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 338 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 187 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 441 | 7.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 282 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 399 | 0.039 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 409 | 450 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 110 | 142 | 12.815584 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 110 | 142 | 15.554599 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45620.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037420517.1 | DDB1- and CUL4-associated factor 8-like [Triticum dicoccoides] | 0 |
| Q6NRH1 | DDB1- and CUL4-associated factor 8 OS=Xenopus laevis OX=8355 GN=dcaf8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HUN2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG014620.