Basic Information
Locus ID:
gene:TRIDC4AG013310
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 108496043 | 108501878 | + | gene:TRIDC4AG013310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 76,839.18 Da | 39.43 | 95.05 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 296 | 338 | 1.49935E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 418 | 456 | 3.8E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 292 | 362 | 1.3E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 500 | 538 | 2.9E-7 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 391 | 663 | 8.83E-48 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 368 | 3.53E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 365 | 3.3E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 377 | 705 | 1.3E-50 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 50 | 163 | 1.6E-8 | IPR036537 |
| SMART | SM00185 | arm_5 | 499 | 539 | 0.017 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 295 | 358 | 1.6E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 581 | 621 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 625 | 665 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 458 | 498 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 417 | 457 | 8.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 540 | 580 | 5.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 11.4974 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 291 | 365 | 45.751728 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 551 | 593 | 9.6774 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 707 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_040243209.1 | LOW QUALITY PROTEIN: protein spotted leaf 11-like [Aegilops tauschii subsp. strangulata] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6HUB3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG013310.