Basic Information
Locus ID:
gene:TRIDC4AG012540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 98894753 | 98913477 | + | gene:TRIDC4AG012540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 37,757.60 Da | 47.94 | 51.53 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 89 | 155 | 6.96E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 157 | 217 | 1.26E-5 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 255 | 9.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 153 | 4.4E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 157 | 209 | 0.005 | IPR001965 |
| SMART | SM00249 | PHD_3 | 210 | 305 | 2.9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 98 | 152 | 0.083 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 155 | 216 | 8.519899 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 339 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55390.1 | ENHANCED DOWNY MILDEW 2. Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. | 0 |
| RefSeq | XP_037420357.1 | protein ENHANCED DOWNY MILDEW 2-like isoform X1 [Triticum dicoccoides] | 0 |
| F4K3G5 | Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IF34 | PHD-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG012540.