Basic Information
Locus ID:
gene:TRIDC4AG011770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal L40e family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 90557213 | 90559444 | + | gene:TRIDC4AG011770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.28 | 14,665.16 Da | 57.58 | 80.46 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01020 | Ribosomal L40e family | 80 | 123 | 1.3E-23 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 34 | 74 | 3.5E-17 | IPR000626 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 79 | 121 | 7.69E-12 | IPR011332 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 34 | 77 | 1.8E-18 | IPR029071 |
| Gene3D | G3DSA:4.10.1060.50 | - | 80 | 126 | 6.8E-23 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 31 | 77 | 2.9E-23 | - |
| SMART | SM00213 | ubq_7 | 14 | 72 | 1.4E-7 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 79 | 130 | 7.0E-20 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 35 | 76 | 19.390202 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 2.5E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 2.5E-21 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037420299.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| P0CH34 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IGG8 | Ubiquitin-like domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG011770.