Basic Information
Locus ID:
gene:TRIDC4AG011310
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 85582252 | 85584630 | - | gene:TRIDC4AG011310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 36,657.17 Da | 50.65 | 46.27 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16539 | RING-HC_RNF113A_B | 264 | 304 | 4.83292E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 265 | 306 | 8.1E-9 | - |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 189 | 214 | 5.0E-10 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 186 | 219 | 1.7E-9 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 308 | 1.79E-13 | - |
| Gene3D | G3DSA:4.10.1000.10 | - | 184 | 220 | 1.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 323 | 3.6E-16 | IPR013083 |
| SMART | SM00356 | c3hfinal6 | 188 | 215 | 1.1E-7 | IPR000571 |
| SMART | SM00184 | ring_2 | 266 | 303 | 7.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 266 | 304 | 10.689412 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 188 | 216 | 14.877594 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 281 | 290 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01350.1 | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037420262.1 | zinc finger CCCH domain-containing protein 15-like [Triticum dicoccoides] | 0 |
| Q6K4V3 | Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HSX0 | Zinc finger CCCH domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG011310.