halophFGD

Basic Information

Locus ID: gene:TRIDC4AG010550

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
4A	78118931	78120223	+	gene:TRIDC4AG010550

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.34	21,998.01 Da	78.83	76.63	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06547	Protein of unknown function (DUF1117)	111	135	7.5E-8	IPR010543
SUPERFAMILY	SSF57850	RING/U-box	52	79	6.06E-9	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	33	83	7.2E-9	IPR013083

KEGG Pathway

KO Term:

K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G39720.1	RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a.
RefSeq	XP_044359883.1	probable E3 ubiquitin-protein ligase RHC2A [Triticum aestivum]
Swiss-Prot	O22283	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1
TrEMBL	A0A8R7U7Z1	DUF1117 domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG010550.