Basic Information
Locus ID:
gene:TRIDC4AG009750
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal L40e family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 70073045 | 70075497 | - | gene:TRIDC4AG009750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.98 | 15,909.39 Da | 40.70 | 85.28 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 14 | 89 | 5.24473E-56 | - |
| Pfam | PF01020 | Ribosomal L40e family | 91 | 140 | 3.2E-31 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 16 | 87 | 4.7E-34 | IPR000626 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 89 | 141 | 5.49E-18 | IPR011332 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 10 | 89 | 2.24E-35 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 7 | 94 | 8.8E-47 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 95 | 141 | 1.3E-32 | IPR038587 |
| SMART | SM00213 | ubq_7 | 14 | 85 | 3.0E-35 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 90 | 141 | 2.8E-32 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 14 | 89 | 30.452106 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 40 | 65 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 66 | 87 | 5.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 24 | 44 | 5.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 45 | 65 | 5.0E-39 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_003558419.1 | ubiquitin-60S ribosomal protein L40-2 [Brachypodium distachyon] | 0 |
| P0CH34 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=1 SV=1 | 0 | |
| TrEMBL | I1IT17 | Ubiquitin-like domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100828943 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG009750.