Basic Information
Locus ID:
gene:TRIDC4AG009160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 63070373 | 63072543 | - | gene:TRIDC4AG009160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 49,125.82 Da | 47.75 | 104.38 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 69 | 111 | 1.08948E-24 | - |
| Pfam | PF04564 | U-box domain | 65 | 134 | 1.4E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 172 | 445 | 3.1E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 63 | 135 | 2.98E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 151 | 456 | 2.8E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 146 | 6.2E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 68 | 131 | 1.5E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 64 | 138 | 35.384567 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49810.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037420094.1 | U-box domain-containing protein 75 [Triticum dicoccoides] | 0 |
| Q10PI9 | U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica OX=39947 GN=TUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HS44 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG009160.