Basic Information
Locus ID:
gene:TRIDC4AG006280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 37404050 | 37407796 | - | gene:TRIDC4AG006280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 64,745.26 Da | 28.33 | 67.17 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16663 | RING-Ubox_PPIL2 | 38 | 110 | 3.08077E-43 | IPR026951 |
| CDD | cd01923 | cyclophilin_RING | 346 | 503 | 7.33057E-104 | - |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 346 | 496 | 6.8E-48 | IPR002130 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 104 | 7.77E-16 | - |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 346 | 511 | 1.61E-63 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 327 | 511 | 1.3E-70 | IPR029000 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | 2.8E-15 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 39 | 101 | 7.2E-12 | IPR003613 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 350 | 497 | 32.000484 | IPR002130 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 35 | 108 | 29.210268 | IPR003613 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 381 | 398 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 429 | 444 | 4.1E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 444 | 456 | 4.1E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 457 | 472 | 4.1E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 360 | 375 | 4.1E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 386 | 398 | 4.1E-23 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 527 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67530.1 | plant U-box 49. | 0 |
| RefSeq | XP_037419879.1 | peptidyl-prolyl cis-trans isomerase CYP65-like [Triticum dicoccoides] | 0 |
| Q9FJX0 | Peptidyl-prolyl cis-trans isomerase CYP65 OS=Arabidopsis thaliana OX=3702 GN=CYP65 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HSE4 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG006280.