HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene:TRIDC4AG005980
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: F-box-like
Maps and Mapping Data
Chromosome Start End Strand ID
4A 36204706 36205635 + gene:TRIDC4AG005980
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.64 20,461.13 Da 50.06 97.19 0.01
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 56 96 7.0E-8 IPR001810
SUPERFAMILY SSF81383 F-box domain 56 127 1.57E-13 IPR036047
Gene3D G3DSA:1.20.1280.50 - 54 128 1.9E-9 -
MobiDBLite mobidb-lite consensus disorder prediction 1 23 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G48170.1 F-box family protein. encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. 0
RefSeq XP_037424105.1 F-box protein SNE-like [Triticum dicoccoides] 0
Swiss-Prot Q9LUB6 F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1 0
TrEMBL A0A3B6HNN9 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC4AG005980.

Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.