Basic Information
Locus ID:
gene:TRIDC4AG005350
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBP26
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 31279544 | 31291960 | + | gene:TRIDC4AG005350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 118,808.12 Da | 46.70 | 77.04 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02668 | Peptidase_C19L | 108 | 445 | 3.85465E-137 | IPR033841 |
| CDD | cd01795 | Ubl_USP48 | 964 | 1060 | 6.80914E-28 | IPR044743 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 108 | 444 | 1.6E-41 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 497 | 587 | 4.05E-15 | IPR035927 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 946 | 1024 | 7.6E-10 | IPR029071 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 105 | 446 | 6.87E-80 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 726 | 851 | 4.5E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 93 | 447 | 2.6E-82 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 491 | 595 | 1.9E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 932 | 1026 | 1.1E-6 | - |
| SMART | SM00695 | dusp | 516 | 593 | 1.2E-10 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 107 | 447 | 47.184441 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 731 | 859 | 10.998637 | IPR006615 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 960 | 1022 | 8.829134 | IPR000626 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 498 | 591 | 12.747927 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 108 | 123 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 343 | 361 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 942 | 964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 430 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49600.1 | ubiquitin-specific protease 26. Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. | 0 |
| RefSeq | XP_037419820.1 | ubiquitin carboxyl-terminal hydrolase 26-like [Triticum dicoccoides] | 0 |
| A3AF13 | Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP26 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6HMX5 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG005350.