Basic Information
Locus ID:
gene:TRIDC4AG003110
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
BEST Arabidopsis thaliana protein match is Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 16127640 | 16138131 | - | gene:TRIDC4AG003110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 173,282.16 Da | 52.45 | 75.58 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 1320 | 1554 | 3.33754E-13 | - |
| Pfam | PF04781 | Protein of unknown function (DUF627) | 49 | 156 | 3.5E-18 | IPR006866 |
| Pfam | PF04780 | Protein of unknown function (DUF629) | 319 | 800 | 4.6E-111 | IPR006865 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1231 | 1532 | 1.2E-21 | IPR001394 |
| SUPERFAMILY | SSF48452 | TPR-like | 39 | 163 | 5.82E-5 | IPR011990 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1230 | 1554 | 3.14E-32 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1213 | 1555 | 1.0E-33 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 31 | 188 | 4.5E-6 | IPR011990 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1230 | 1556 | 20.361816 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1177 | - | - |
| Coils | Coil | Coil | 962 | 996 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47890.1 | Ubiquitin carboxyl-terminal hydrolase-related protein. | 0 |
| RefSeq | XP_037419696.1 | uncharacterized protein LOC119284649 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6HRP0 | USP domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG003110.