Basic Information
Locus ID:
gene:TRIDC4AG001420
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 Ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 6367411 | 6378104 | - | gene:TRIDC4AG001420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 33,684.34 Da | 45.71 | 85.34 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 244 | 291 | 2.9E-13 | - |
| Pfam | PF12483 | E3 Ubiquitin ligase | 48 | 194 | 5.0E-29 | IPR022170 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 292 | 3.26E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 297 | 1.1E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 286 | 10.48287 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 237 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54150.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_037419582.1 | E3 ubiquitin-protein ligase SPL2-like [Triticum dicoccoides] | 0 |
| Q9SYH3 | E3 ubiquitin-protein ligase SPL2 OS=Arabidopsis thaliana OX=3702 GN=SPL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6JLS8 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG001420.