Basic Information
Locus ID:
gene:TRIDC4AG000190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4A | 1694648 | 1703035 | - | gene:TRIDC4AG000190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 88,676.69 Da | 48.02 | 75.30 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 131 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 703 | 736 | 0.083 | IPR001680 |
| SUPERFAMILY | SSF48452 | TPR-like | 439 | 528 | 2.59E-10 | IPR011990 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 94 | 739 | 5.95E-50 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 432 | 559 | 1.5E-11 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 394 | 5.3E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 654 | 779 | 3.2E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 189 | 229 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 695 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 360 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 176 | 0.063 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 705 | 736 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 131 | 11.840134 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| Coils | Coil | Coil | 522 | 549 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10940.2 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037419502.1 | WD and tetratricopeptide repeats protein 1-like [Triticum dicoccoides] | 0 |
| Q94BQ3 | Protein ALTERED SEED GERMINATION 2 OS=Arabidopsis thaliana OX=3702 GN=ASG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IYJ9 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC4AG000190.